Seqencing reactions (using Amersham ThermoSequenase Kit)
  1. a) Get full tub and bucket of ice, b) get isotope out if in -20°C
  2. Get dGTP or dITP master mix buffer and reaction buffer out and thaw on ice
  3. Thaw primers on ice, they need to be 2 pmol/l
  4. Label 4 PCR tubes per sample in the following order and color code:

    Base Letter Marker Color Description
    A black all colors
    C red crimson
    G green
    T blue teal

  5. Label 4 colored tubes for termination mixes and _X_ colored tubes for sample reaction mixes
  6. Get dNTPs out to thaw
  7. Do termination mix calc. using kit quick card as preparing for (n + 1) samples
  8. Do reaction mix calc. (normally 1 l of mini prep is used, so adjust H2O)
  9. Transfer 2.5 l termination mix to each appropriate tube (left to right)
  10. Transfer 4.5 l reaction mix to each appropriate tube (front to back) and mix sol'n with pipet tip

    Tub diagram:
    T T T T T
    Hot G G G G G
    bases CC C C C
    AA A A A
    Samples: 12 3 4 5

  11. If using "Bonnie" don't need to overlay with oil
  12. Thaw stop sol'n at end of cycles and add 4 l to each tube using single tip
  13. Spin pulse all samples
  14. Store at -20°C in refrig freezer

Notes:

  • Make sure all "hot" tips and bullets get put into the radioactive solid waste
  • In our experience, the reaction will not work if the buffers are switched
  • It is very easy to get confused, allow yourself plenty of time to set up and mix the reactions; they can be done the day before and froze